With ongoing work through the SEA-PHAGES program (Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science), new bacteriophages have been sequenced and need to be annotated. Completion of genome annotation of these newly discovered bacteriophages have led to several new NCBI database entries for bacteriophage discoveries. In addition to annotation of several bacteriophages, there was a need to create a database specific for R. capsulatus bacteriophages that can be easily accessible via the web. While previous work had been done by Dr. Richard Alvey and students at Illinois Wesleyan University to create a database, accessibility to the application had been a challenge. Due to these issues, I created an online database specific for the needs of IWU's biology department, making uploads of new bacteriophage annotations easier and more accessible to students. This online database will also prevent repetitive annotation errors and promote more accurate genome annotations for future SEA-PHAGE projects.

Furthermore, the need arose to create a new application using MySQL, the relational database system currently being used by IWU's server. Although I had been using MongoDB, a non-relational database, I modified the preexisting online platform to accomodate the MySQL relational database so that the website could be hosted locally.

As more viruses are being discovered, there is a demand to understand the genetic composition of these particles. Prior to this study, none of the genes in bacteriophages that infect Rhodobacter capsulatus have been tested for gene function. Gene 18 of R. capsulatus bacteriophage MrWorf shows potential for encoding an ATP dependent DNA helicase. This is an enzyme which is vital in biological processes such as repairing DNA, replication, and recombination. The gene of interest was amplified via PCR using gene specific primers, cloned into the pET-14b vector, and transformed into competent cells. The cells were induced by IPTG to express the protein product of gene 18 and after purification by HisPur TM Cobalt Spin Column, SDS-PAGE analysis revealed purification to be successful. Further work will need to be conducted to reveal the relationship between gene 18 protein product and ATP-dependent DNA helicase.

Over the course of a semester, I developed the skills and worked on a team of three to develop and design an application focused for students to plan their course materials. The purpose of the application is to create a user-friendly experience where front-end clients can add and organize their assignments based on features that they can control. Some of these features include course names, assigned priority level, completion date, and even personalized assignment categories.

The overall development of the application required constant adjustment throughout the eight weeks as we adapted to the skillset of the team and the ambition of the website goals. During the initial stages of brainstorming, the team designed and imagined several different features. However, through the programming process, we slightly reimagined the project as the current application used today.